Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_1972Transcriptional regulator. (189 aa)    
Predicted Functional Partners:
LVIS_0302
Hypothetical protein.
  
     0.715
LVIS_0179
Transcriptional regulator, BadM/Rrf2 family.
  
     0.561
LVIS_1970
Double-stranded beta-helix related protein.
  
    0.462
LVIS_1969
Gamma-carboxymuconolactone decarboxylase subunit-like protein.
       0.458
LVIS_1971
Transcriptional regulator, MerR family.
       0.458
LVIS_0839
Transcriptional regulator.
  
     0.419
LVIS_1269
Hypothetical protein.
  
     0.416
LVIS_0553
Transcriptional regulator.
  
     0.415
LVIS_0727
Hypothetical protein.
  
     0.400
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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