STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_1981Hypothetical protein. (235 aa)    
Predicted Functional Partners:
LVIS_1983
Predicted membrane protein.
 
     0.931
LVIS_1985
ABC-type cobalt transport system, permease component CbiQ related transporter.
 
     0.901
LVIS_1984
ABC-type cobalt transport system, ATPase component (duplicated domains).
 
     0.899
LVIS_1982
Hypothetical protein.
       0.732
rtpR
Ribonucleotide reductase, alpha subunit; Belongs to the class II ribonucleoside-triphosphate reductase family.
  
     0.604
LVIS_2135
Polysaccharide transport membrane protein.
  
     0.565
LVIS_0233
Predicted protease.
  
     0.530
LVIS_1787
Predicted metal-dependent membrane protease.
  
     0.517
LVIS_1105
Hypothetical protein.
  
  
 0.469
LVIS_2086
Hypothetical protein.
  
     0.452
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.