STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_1989Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
LVIS_1986
Hypothetical protein.
 
   
 0.963
LVIS_1988
3-polyprenyl-4-hydroxybenzoate decarboxylase related decarboxylase; Belongs to the UbiD family.
 
   
 0.940
ubiX
3-polyprenyl-4-hydroxybenzoate decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
   
 0.895
LVIS_0344
Fhu operon transcription regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.728
LVIS_0398
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.641
LVIS_2204
Malolactic fermentation system transcription activator; Belongs to the LysR transcriptional regulatory family.
  
     0.616
LVIS_1990
N-formylmethionyl-tRNA deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
 
    0.597
LVIS_0806
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.411
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.