STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_2002Beta-lactamase class A. (320 aa)    
Predicted Functional Partners:
LVIS_1962
Penicillin V acylase precursor. Cysteine peptidase. MEROPS family C59.
     
  0.900
LVIS_2132
Penicillin V acylase precursor. Cysteine peptidase. MEROPS family C59.
     
  0.900
LVIS_0385
Arabinose efflux permease.
      
 0.732
LVIS_1976
Arabinose efflux permease.
      
 0.732
LVIS_1977
Arabinose efflux permease.
      
 0.732
LVIS_0373
Short-chain alcohol dehydrogenase.
  
   
 0.591
LVIS_1999
Uncharacterized ABC transporter, permease component.
       0.485
LVIS_2000
Uncharacterized ABC transporter, ATPase component.
       0.485
LVIS_2001
Transcriptional regulator, GntR family.
       0.485
LVIS_1986
Hypothetical protein.
  
     0.476
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.