STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_2005Permease of the major facilitator superfamily. (391 aa)    
Predicted Functional Partners:
LVIS_1208
Permease of the major facilitator superfamily.
  
     0.656
LVIS_2004
Predicted hydrolase of the HAD superfamily.
 
    0.648
LVIS_1806
Permease of the major facilitator superfamily.
  
     0.522
LVIS_1178
Short-chain alcohol dehydrogenase.
  
     0.470
LVIS_1067
Hypothetical protein.
  
     0.461
LVIS_2006
Predicted hydrolase of the HAD superfamily.
  
    0.440
LVIS_1066
Glycosyltransferase.
  
     0.434
LVIS_2003
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.412
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.