Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_2020Hypothetical protein. (133 aa)    
Predicted Functional Partners:
LVIS_1082
Phage Mu gp47 related protein.
  
 
 0.776
LVIS_1722
Predicted transcriptional regulator.
  
    0.540
LVIS_1495
Hypothetical protein.
  
     0.501
LVIS_1206
Methyl-accepting chemotaxis-like protein.
  
     0.484
LVIS_2019
Transcriptional regulator, PadR family.
       0.478
LVIS_2060
Uncharacterized membrane-bound protein conserved in bacteria.
  
     0.477
LVIS_0366
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.462
LVIS_1947
Possible cell surface protein.
 
   0.453
LVIS_0304
Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
 
     0.434
LVIS_0341
Hypothetical protein.
  
     0.423
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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