STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_2024Aminotransferase. (369 aa)    
Predicted Functional Partners:
LVIS_2025
Amino acid transporter.
 
  
 0.918
LVIS_2023
Carbamate kinase; Belongs to the carbamate kinase family.
     
 0.724
arcA
Arginine deiminase.
 
   
 0.709
LVIS_2022
CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
     
 0.651
arcB
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
     
 0.610
LVIS_2021
Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta.
 
     0.597
LVIS_1755
Amino acid transporter.
 
  
 0.591
LVIS_0119
NAD-dependent alcohol-acetaldehyde dehydrogenase and iron-binding alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.453
LVIS_1936
Putative NADPH-quinone reductase (modulator of drug activity B).
   
    0.428
LVIS_0406
Phosphoenolpyruvate synthase.
  
     0.427
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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