STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_2089Small conserved protein. (78 aa)    
Predicted Functional Partners:
LVIS_2090
Hypothetical protein.
       0.718
LVIS_2091
DNA-directed RNA polymerase specialized sigma subunit, sigma24-like.
 
     0.652
LVIS_1512
Glycopeptide antibiotics resistance protein.
  
     0.570
LVIS_0409
ABC-type multidrug transport system, ATPase component.
  
     0.486
LVIS_0157
Hypothetical protein.
 
     0.453
LVIS_1560
Hypothetical protein.
  
     0.450
LVIS_0391
Predicted outer membrane protein.
  
     0.442
LVIS_1266
Transcriptional regulator, xre family.
  
     0.435
LVIS_0252
Hypothetical protein.
  
     0.420
LVIS_0163
Response regulator of the LytR/AlgR family.
  
     0.407
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.