STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_2102ABC-type uncharacterized transport system, ATPase component. (216 aa)    
Predicted Functional Partners:
LVIS_2101
ABC-type uncharacterized transport system, permease component.
  
 0.980
LVIS_1296
ABC-type multidrug transport system, ATPase and permease component.
 
     
0.899
LVIS_1639
Cytochrome bd biosynthesis ABC-type transporter, ATPase and permease component.
 
     
0.889
LVIS_1766
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
     
0.810
LVIS_0178
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
     
0.799
LVIS_0701
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component.
 
    
0.792
LVIS_2100
Short-chain dehydrogenase of various substrate specificities; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.756
ecfT
ABC-type cobalt transport system, permease component CbiQ related transporter; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
      0.654
LVIS_2103
tRNA (uracil-5-)-methyltransferase related enzyme; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.488
LVIS_2104
Hypothetical protein.
       0.440
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.