STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_2135Polysaccharide transport membrane protein. (534 aa)    
Predicted Functional Partners:
LVIS_0432
Transcriptional regulator, xre family.
  
     0.601
LVIS_1981
Hypothetical protein.
  
     0.565
LVIS_1985
ABC-type cobalt transport system, permease component CbiQ related transporter.
  
    0.501
LVIS_0061
Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters.
  
     0.494
rtpR
Ribonucleotide reductase, alpha subunit; Belongs to the class II ribonucleoside-triphosphate reductase family.
  
     0.487
LVIS_0840
Immunity protein PlnI, membrane-bound protease CAAX family.
  
     0.465
LVIS_0699
ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
     0.463
LVIS_1555
Hypothetical protein.
 
     0.418
LVIS_1999
Uncharacterized ABC transporter, permease component.
  
     0.415
LVIS_2284
Predicted membrane protein.
  
     0.406
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.