STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_2265DNA-binding response regulator (Rec-wHTH domains). (253 aa)    
Predicted Functional Partners:
LVIS_0493
Possible cell surface protein.
  
    0.695
LVIS_1947
Possible cell surface protein.
  
    0.687
LVIS_2262
Hypothetical protein.
 
    0.609
LVIS_2263
Hypothetical protein.
 
    0.590
LVIS_2264
Hypothetical protein.
       0.497
LVIS_0231
Protein tyrosine phosphatase.
   
    0.489
LVIS_0055
Acetyltransferase, GNAT family.
  
     0.431
LVIS_0229
Transcriptional regulator.
  
     0.422
LVIS_0400
Transcriptional regulator, AraC family.
 
 
 0.405
LVIS_2225
Transcriptional regulator, AraC family.
  
     0.403
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.