STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ef1bTranslation elongation factor 1B (aEF-1B); Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. (88 aa)    
Predicted Functional Partners:
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
   
 0.995
rps3
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 
 0.990
AGK60393.1
PF07754:COG2888; PFAM: Domainofunknownfunction(DUF1610); COG: Predicted Zn-ribbon RNA-binding protein with a function in translation.
 
  
 0.988
rpl21e
PF01157:COG2139; PFAM: RibosomalproteinL21e; COG: Ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 
 0.983
rpl14
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.982
rpl15e
LSU ribosomal protein L15E; PF00827:COG1632; PFAM: RibosomalL15; COG: Ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 
 0.982
rps17e
SSU ribosomal protein S17E; PF00833:COG1383; PFAM: RibosomalS17; COG: Ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
 
   0.980
rpl24e
LSU ribosomal protein L24E; Binds to the 23S rRNA.
  
   0.980
rpl29
PF00831:TIGR00012:COG0255; PFAM: RibosomalL29protein; COG: Ribosomal protein L29; TIGR: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 0.974
rps17
SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 
 0.969
Your Current Organism:
Archaeoglobus sulfaticallidus
NCBI taxonomy Id: 387631
Other names: A. sulfaticallidus PM70-1, Archaeoglobus sp. PM70-1, Archaeoglobus sulfaticallidus PM70-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.