STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRP_058Putative DNA primase. (257 aa)    
Predicted Functional Partners:
CRP_055
Putative replicative DNA helicase.
 
 
 0.999
CRP_059
Putative RNA polymerase sigma factor rpoD.
 
  
 0.956
CRP_023
DNA polymerase III alpha subunit.
 
  
 0.830
CRP_101
Putative glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
    0.729
CRP_102
methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.717
rpoC
RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 
 
 0.711
rpoB
RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
   
 0.674
rpsB
Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
 
  
 0.656
CRP_132
Ribosomal protein L27.
  
  
 0.602
CRP_036
Putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase.
 
    0.598
Your Current Organism:
Carsonella ruddii PV
NCBI taxonomy Id: 387662
Other names: C. Carsonella ruddii PV, Candidatus Carsonella ruddii PV, Candidatus Carsonella ruddii str. PV, Candidatus Carsonella ruddii strain PV, Carsonella-Pv
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.