STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMG1EMG1 N1-specific pseudouridine methyltransferase. (309 aa)    
Predicted Functional Partners:
RPS9
Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
  0.999
UTP3
UTP3 small subunit processome component.
   
 0.999
FCF1
FCF1 rRNA-processing protein.
   
 0.999
RPS6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.999
RPS7
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
  0.999
UTP20
UTP20 small subunit processome component.
   
 0.999
WDR46
WD repeat domain 46.
   
 0.999
UTP11
UTP11 small subunit processome component.
   
 0.999
NOC4L
Nucleolar complex associated 4 homolog.
   
 0.999
PDCD11
Programmed cell death 11.
   
 0.999
Your Current Organism:
Gopherus agassizii
NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.