STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXC12Homeobox C12. (267 aa)    
Predicted Functional Partners:
PBX4
PBX homeobox 4.
    
 
 0.467
PBX2
Homeobox domain-containing protein.
    
 
 0.467
ENSGAGP00000015862
Homeobox domain-containing protein.
    
 
 0.467
ENSGAGP00000017704
PBC domain-containing protein.
    
 
 0.467
ENSGAGP00000031374
Homeobox domain-containing protein.
    
 
 0.467
ENSGAGP00000032027
Uncharacterized protein.
    
 
 0.467
EHMT1
Euchromatic histone lysine methyltransferase 1.
    
 
 0.461
ENSGAGP00000034801
Homeobox domain-containing protein.
  
 
 
0.420
HOXC6
Homeobox C6.
    
 
0.418
HOXB7
Homeobox B7.
    
 
0.413
Your Current Organism:
Gopherus agassizii
NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.