TNPO2 protein (Gopherus agassizii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TNPO2

Transportin 2. (888 aa)

Predicted Functional Partners:

RAN

0.923

ZC3H14

0.899

ENSGAGP00000025177

0.874

ENSGAGP00000030992

0.874

NUP98

0.869

ENSGAGP00000004169

0.821

ENSGAGP00000026203

0.811

IPO5

0.807

ENSGAGP00000001243

0.803

ADGRB1

0.803

Your Current Organism:

Gopherus agassizii

NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRB1	ENSGAGP00000004169	ENSGAGP00000004098	ENSGAGP00000004169	Adhesion G protein-coupled receptor B1; Belongs to the G-protein coupled receptor 2 family.	Importin N-terminal domain-containing protein.	0.652
ADGRB1	IPO5	ENSGAGP00000004098	ENSGAGP00000005876	Adhesion G protein-coupled receptor B1; Belongs to the G-protein coupled receptor 2 family.	Importin 5.	0.652
ADGRB1	NUP98	ENSGAGP00000004098	ENSGAGP00000001757	Adhesion G protein-coupled receptor B1; Belongs to the G-protein coupled receptor 2 family.	Nucleoporin 98.	0.618
ADGRB1	TNPO2	ENSGAGP00000004098	ENSGAGP00000013249	Adhesion G protein-coupled receptor B1; Belongs to the G-protein coupled receptor 2 family.	Transportin 2.	0.803
ENSGAGP00000001243	ENSGAGP00000004169	ENSGAGP00000001243	ENSGAGP00000004169	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.652
ENSGAGP00000001243	IPO5	ENSGAGP00000001243	ENSGAGP00000005876	Uncharacterized protein.	Importin 5.	0.652
ENSGAGP00000001243	NUP98	ENSGAGP00000001243	ENSGAGP00000001757	Uncharacterized protein.	Nucleoporin 98.	0.618
ENSGAGP00000001243	TNPO2	ENSGAGP00000001243	ENSGAGP00000013249	Uncharacterized protein.	Transportin 2.	0.803
ENSGAGP00000004169	ADGRB1	ENSGAGP00000004169	ENSGAGP00000004098	Importin N-terminal domain-containing protein.	Adhesion G protein-coupled receptor B1; Belongs to the G-protein coupled receptor 2 family.	0.652
ENSGAGP00000004169	ENSGAGP00000001243	ENSGAGP00000004169	ENSGAGP00000001243	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.652
ENSGAGP00000004169	ENSGAGP00000025177	ENSGAGP00000004169	ENSGAGP00000025177	Importin N-terminal domain-containing protein.	G_PROTEIN_RECEP_F2_4 domain-containing protein; Belongs to the G-protein coupled receptor 2 family.	0.893
ENSGAGP00000004169	ENSGAGP00000030992	ENSGAGP00000004169	ENSGAGP00000030992	Importin N-terminal domain-containing protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.893
ENSGAGP00000004169	IPO5	ENSGAGP00000004169	ENSGAGP00000005876	Importin N-terminal domain-containing protein.	Importin 5.	0.933
ENSGAGP00000004169	NUP98	ENSGAGP00000004169	ENSGAGP00000001757	Importin N-terminal domain-containing protein.	Nucleoporin 98.	0.500
ENSGAGP00000004169	RAN	ENSGAGP00000004169	ENSGAGP00000031001	Importin N-terminal domain-containing protein.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.925
ENSGAGP00000004169	TNPO2	ENSGAGP00000004169	ENSGAGP00000013249	Importin N-terminal domain-containing protein.	Transportin 2.	0.821
ENSGAGP00000004169	ZC3H14	ENSGAGP00000004169	ENSGAGP00000006229	Importin N-terminal domain-containing protein.	Zinc finger CCCH-type containing 14.	0.417
ENSGAGP00000025177	ENSGAGP00000004169	ENSGAGP00000025177	ENSGAGP00000004169	G_PROTEIN_RECEP_F2_4 domain-containing protein; Belongs to the G-protein coupled receptor 2 family.	Importin N-terminal domain-containing protein.	0.893
ENSGAGP00000025177	ENSGAGP00000030992	ENSGAGP00000025177	ENSGAGP00000030992	G_PROTEIN_RECEP_F2_4 domain-containing protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.585
ENSGAGP00000025177	IPO5	ENSGAGP00000025177	ENSGAGP00000005876	G_PROTEIN_RECEP_F2_4 domain-containing protein; Belongs to the G-protein coupled receptor 2 family.	Importin 5.	0.905