STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCCAPropionyl-CoA carboxylase subunit alpha. (665 aa)    
Predicted Functional Partners:
PCCB
Propionyl-CoA carboxylase subunit beta.
 
 0.991
MCCC2
Methylcrotonoyl-CoA carboxylase 2.
 
 0.986
ENSGAGP00000034879
Uncharacterized protein.
  
 0.986
MCAT
Malonyl-CoA-acyl carrier protein transacylase.
  
 
 0.955
NELFB
Negative elongation factor complex member B.
   
 0.953
OXSM
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.947
IVD
Isovaleryl-CoA dehydrogenase.
  
 0.924
DBT
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
  
 0.914
HIBADH
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
  
 0.911
HPDL
4-hydroxyphenylpyruvate dioxygenase like.
  
 
 0.901
Your Current Organism:
Gopherus agassizii
NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.