ENSGAGP00000020084 protein (Gopherus agassizii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSGAGP00000020084

Ig-like domain-containing protein; Belongs to the MHC class I family. (224 aa)

Predicted Functional Partners:

B2M

0.911

RPA2

0.889

ENSGAGP00000015791

0.860

CD8A

0.850

STN1

0.772

ENSGAGP00000005751

0.772

SASS6

0.772

ENSGAGP00000020648

0.756

ENSGAGP00000015614

0.674

ENSGAGP00000022483

0.674

Your Current Organism:

Gopherus agassizii

NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B2M	CD8A	ENSGAGP00000002782	ENSGAGP00000027615	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	CD8a molecule.	0.959
B2M	ENSGAGP00000015791	ENSGAGP00000002782	ENSGAGP00000015791	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.	0.986
B2M	ENSGAGP00000020084	ENSGAGP00000002782	ENSGAGP00000020084	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.911
B2M	ENSGAGP00000020648	ENSGAGP00000002782	ENSGAGP00000020648	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	Uncharacterized protein.	0.909
CD8A	B2M	ENSGAGP00000027615	ENSGAGP00000002782	CD8a molecule.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.959
CD8A	ENSGAGP00000005751	ENSGAGP00000027615	ENSGAGP00000005751	CD8a molecule.	Uncharacterized protein.	0.892
CD8A	ENSGAGP00000015791	ENSGAGP00000027615	ENSGAGP00000015791	CD8a molecule.	MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.	0.994
CD8A	ENSGAGP00000020084	ENSGAGP00000027615	ENSGAGP00000020084	CD8a molecule.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.850
CD8A	RPA2	ENSGAGP00000027615	ENSGAGP00000007108	CD8a molecule.	Replication protein A2.	0.959
CD8A	SASS6	ENSGAGP00000027615	ENSGAGP00000032575	CD8a molecule.	SAS-6 centriolar assembly protein.	0.892
CD8A	STN1	ENSGAGP00000027615	ENSGAGP00000004437	CD8a molecule.	STN1 subunit of CST complex.	0.892
ENSGAGP00000005751	CD8A	ENSGAGP00000005751	ENSGAGP00000027615	Uncharacterized protein.	CD8a molecule.	0.892
ENSGAGP00000005751	ENSGAGP00000015791	ENSGAGP00000005751	ENSGAGP00000015791	Uncharacterized protein.	MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.	0.946
ENSGAGP00000005751	ENSGAGP00000020084	ENSGAGP00000005751	ENSGAGP00000020084	Uncharacterized protein.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.772
ENSGAGP00000015614	ENSGAGP00000015791	ENSGAGP00000015614	ENSGAGP00000015791	Ig-like domain-containing protein.	MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.	0.760
ENSGAGP00000015614	ENSGAGP00000020084	ENSGAGP00000015614	ENSGAGP00000020084	Ig-like domain-containing protein.	Ig-like domain-containing protein; Belongs to the MHC class I family.	0.674
ENSGAGP00000015791	B2M	ENSGAGP00000015791	ENSGAGP00000002782	MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.986
ENSGAGP00000015791	CD8A	ENSGAGP00000015791	ENSGAGP00000027615	MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.	CD8a molecule.	0.994
ENSGAGP00000015791	ENSGAGP00000005751	ENSGAGP00000015791	ENSGAGP00000005751	MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.	Uncharacterized protein.	0.946
ENSGAGP00000015791	ENSGAGP00000015614	ENSGAGP00000015791	ENSGAGP00000015614	MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.	Ig-like domain-containing protein.	0.760