STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL4A6Collagen type IV alpha 6 chain. (1686 aa)    
Predicted Functional Partners:
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
    
 0.830
ITGA11
Integrin subunit alpha 11; Belongs to the integrin alpha chain family.
    
 0.817
ITGA2
Integrin subunit alpha 2; Belongs to the integrin alpha chain family.
    
 0.815
ITGA9
Integrin subunit alpha 9; Belongs to the integrin alpha chain family.
    
 0.812
ENSGAGP00000013961
Uncharacterized protein.
    
  0.793
ENSGAGP00000013963
Ig-like domain-containing protein.
    
  0.793
ENSGAGP00000027504
Link domain-containing protein.
    
 0.781
ITGB5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.751
ITGB6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.748
ITGAV
Integrin subunit alpha V; Belongs to the integrin alpha chain family.
    
 0.745
Your Current Organism:
Gopherus agassizii
NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.