STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAF4TNF receptor-associated factor. (470 aa)    
Predicted Functional Partners:
BIRC6
Baculoviral IAP repeat containing 6.
    
 0.861
ENSGAGP00000003675
Uncharacterized protein.
    
 0.855
ENSGAGP00000003689
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.855
MAP3K6
Mitogen-activated protein kinase kinase kinase 6.
    
 0.855
TRADD
TNFRSF1A associated via death domain.
    
 0.841
MIB2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.817
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.781
ENSGAGP00000019974
Ubiquitin-like domain-containing protein.
    
 0.769
ENSGAGP00000028873
Ubiquitin-like domain-containing protein.
    
 0.769
UBE2V1
Ubiquitin conjugating enzyme E2 V1.
    
 0.768
Your Current Organism:
Gopherus agassizii
NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise
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