STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX10RNA helicase. (865 aa)    
Predicted Functional Partners:
ENSGAGP00000012303
Uncharacterized protein.
   
 0.998
UTP3
UTP3 small subunit processome component.
   
 0.995
NOM1
Nucleolar protein with MIF4G domain 1.
   
 
 0.995
ENSGAGP00000002897
SANTA domain-containing protein.
   
 0.994
NOL6
Nucleolar protein 6.
   
 0.994
ENSGAGP00000011103
NUC153 domain-containing protein.
   
 
 0.993
ENSGAGP00000011106
Uncharacterized protein.
   
 
 0.993
RRP36
Ribosomal RNA processing 36.
   
 0.992
ABT1
Activator of basal transcription 1.
   
 
 0.991
KCTD19
Potassium channel tetramerization domain containing 19.
   
   0.988
Your Current Organism:
Gopherus agassizii
NCBI taxonomy Id: 38772
Other names: G. agassizii, Gopherus agassizi, Gopherus polyphemus agassizii, USNM 7888, desert tortoise
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.