STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTR_0265s0020RPN1_C domain-containing protein. (203 aa)    
Predicted Functional Partners:
A0A072TSI9
Putative tetratricopeptide-like helical domain-containing protein.
   
   0.795
G7LE23_MEDTR
30S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
   
   0.719
A0A072VKA9
Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.
    
 
 0.672
A0A072UZ40
Putative ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
   0.632
G7I876_MEDTR
Putative 3-hydroxyisobutyryl-CoA hydrolase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
   0.632
G7J0M5_MEDTR
Putative ribosomal protein S23/S29.
   
   0.630
rps16-1
30S ribosomal S16-like protein.
   
   0.623
A0A072UFS4
Putative ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family.
   
   0.622
G7JBP6_MEDTR
50S ribosomal protein L4, bacterial/organelle protein.
   
   0.622
A0A072V7A1
Putative ribosomal protein L19.
   
   0.620
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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