STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A072TMF2Pectin lyase superfamily protein. (356 aa)    
Predicted Functional Partners:
A0A072VJW3
Pectate lyase.
     
 0.721
A0A072VR83
Pectate lyase.
     
 0.721
G7KZQ1_MEDTR
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
  
 
0.706
G7L9V7_MEDTR
Pectinesterase; In the C-terminal section; belongs to the pectinesterase family.
     
 0.705
A0A072U2V5
Pectate lyase.
     
 0.704
A0A072VRH1
Pectate lyase.
     
 0.704
A0A072VVN7
Pectate lyase.
     
 0.704
A0A072VT00
Pectate lyase.
     
 0.702
G7L2D3_MEDTR
Pectate lyase.
     
 0.702
PG3
Polygalacturonase.
  
  
 
0.693
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.