STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A072TTL5Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (915 aa)    
Predicted Functional Partners:
A0A072V3N9
High mobility group B-like protein.
    
 
 0.555
G7IF34_MEDTR
Putative transcription factor & chromatin remodeling ARID-HMG family.
    
 
 0.555
G7J0D1_MEDTR
Putative transcription factor & chromatin remodeling ARID-HMG family.
    
 
 0.555
G7K4J6_MEDTR
ARID/bright DNA-binding domain protein.
    
 
 0.555
G7KBS3_MEDTR
Putative transcription factor C2C2-YABBY family.
    
 
 0.555
G7KWP7_MEDTR
High mobility group B-like protein.
    
 
 0.555
G7J4X6_MEDTR
Putative transcription factor NAM family.
  
 
  0.546
G7JV46_MEDTR
Beta-tubulin, putative.
    
 0.521
A0A072UZ30
Putative transcription factor NAM family.
  
 
  0.519
G7KQ48_MEDTR
Putative transcription factor NAM family.
  
 
  0.517
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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