A0A072U030 protein (Medicago truncatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A072U030

Receptor-like kinase S.2. (855 aa)

Predicted Functional Partners:

A0A072V4P2

0.571

A0A072ULR7

0.521

A0A072U3D2

0.514

G7I5N5_MEDTR

0.490

G7IG51_MEDTR

0.489

stv1

0.483

A0A072UEP1

0.481

G7KDK6_MEDTR

0.478

G7KW50_MEDTR

0.470

G7LA40_MEDTR

0.468

Your Current Organism:

Medicago truncatula

NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A072U030	A0A072U3D2	A0A072U030	A0A072U3D2	Receptor-like kinase S.2.	Mediator of RNA polymerase II transcription subunit 27.	0.514
A0A072U030	A0A072UEP1	A0A072U030	A0A072UEP1	Receptor-like kinase S.2.	7,8-dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	0.481
A0A072U030	A0A072ULR7	A0A072U030	A0A072ULR7	Receptor-like kinase S.2.	Tetrapyrrole-binding protein.	0.521
A0A072U030	A0A072V4P2	A0A072U030	A0A072V4P2	Receptor-like kinase S.2.	Putative transcription factor WD40-like family.	0.571
A0A072U030	G7I5N5_MEDTR	A0A072U030	G7I5N5	Receptor-like kinase S.2.	Peptide-N-acetylglucosaminyltransferase.	0.490
A0A072U030	G7IG51_MEDTR	A0A072U030	G7IG51	Receptor-like kinase S.2.	NADH dehydrogenase (Ubiquinone)S protein, putative.	0.489
A0A072U030	G7KDK6_MEDTR	A0A072U030	G7KDK6	Receptor-like kinase S.2.	Uncharacterized protein.	0.478
A0A072U030	G7KW50_MEDTR	A0A072U030	G7KW50	Receptor-like kinase S.2.	Uncharacterized protein.	0.470
A0A072U030	G7LA40_MEDTR	A0A072U030	G7LA40	Receptor-like kinase S.2.	Uncharacterized protein.	0.468
A0A072U030	stv1	A0A072U030	Q4JEZ1	Receptor-like kinase S.2.	Putative beta-galactoside alpha-2,3-sialyltransferase; Belongs to the glycosyltransferase 29 family.	0.483
A0A072U3D2	A0A072U030	A0A072U3D2	A0A072U030	Mediator of RNA polymerase II transcription subunit 27.	Receptor-like kinase S.2.	0.514
A0A072U3D2	A0A072UEP1	A0A072U3D2	A0A072UEP1	Mediator of RNA polymerase II transcription subunit 27.	7,8-dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	0.462
A0A072U3D2	A0A072ULR7	A0A072U3D2	A0A072ULR7	Mediator of RNA polymerase II transcription subunit 27.	Tetrapyrrole-binding protein.	0.575
A0A072U3D2	A0A072V4P2	A0A072U3D2	A0A072V4P2	Mediator of RNA polymerase II transcription subunit 27.	Putative transcription factor WD40-like family.	0.592
A0A072U3D2	stv1	A0A072U3D2	Q4JEZ1	Mediator of RNA polymerase II transcription subunit 27.	Putative beta-galactoside alpha-2,3-sialyltransferase; Belongs to the glycosyltransferase 29 family.	0.523
A0A072UEP1	A0A072U030	A0A072UEP1	A0A072U030	7,8-dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	Receptor-like kinase S.2.	0.481
A0A072UEP1	A0A072U3D2	A0A072UEP1	A0A072U3D2	7,8-dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	Mediator of RNA polymerase II transcription subunit 27.	0.462
A0A072UEP1	A0A072V4P2	A0A072UEP1	A0A072V4P2	7,8-dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	Putative transcription factor WD40-like family.	0.508
A0A072ULR7	A0A072U030	A0A072ULR7	A0A072U030	Tetrapyrrole-binding protein.	Receptor-like kinase S.2.	0.521
A0A072ULR7	A0A072U3D2	A0A072ULR7	A0A072U3D2	Tetrapyrrole-binding protein.	Mediator of RNA polymerase II transcription subunit 27.	0.575