Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A072U321Cytochrome P450 family protein; Belongs to the cytochrome P450 family. (519 aa)    
Predicted Functional Partners:
MTR_0653s0040
5'-adenylylsulfate reductase.
    
 0.783
A0A072USX1
5'-adenylylsulfate reductase, putative.
    
 0.783
A0A072V4H5
Putative adenylyl-sulfate reductase (Thioredoxin).
    
 0.783
G7ZYX3_MEDTR
Cytochrome P450 family Ent-kaurenoic acid oxidase; Belongs to the cytochrome P450 family.
  
  
 
0.555
A0A072U2D4
Indole-3-glycerol phosphate lyase IGL1; Belongs to the TrpA family.
    
 0.517
A0A072U3U9
Indole-3-glycerol phosphate lyase IGL1; Belongs to the TrpA family.
    
 0.517
G7JQT3_MEDTR
3-dehydroquinate dehydratase/shikimate dehydrogenase.
    
 0.497
G7KZT1_MEDTR
Dehydroquinate dehydratase/shikimate dehydrogenase.
    
 0.494
NR2
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.489
G7J3M8_MEDTR
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.489
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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