STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A072U8T6Mediator of RNA polymerase II transcription subunit 36a. (309 aa)    
Predicted Functional Partners:
G7JT47_MEDTR
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.996
B7FLU4_MEDTR
NOP56-like pre RNA processing ribonucleoprotein.
   
 0.995
G7IJV2_MEDTR
Putative transcription factor WD40-like family.
   
 0.995
G7KPT4_MEDTR
SnoRNA-binding domain protein, putative.
   
 0.993
G7JIJ7_MEDTR
NOP56-like pre RNA processing ribonucleoprotein.
   
 0.990
G7KC30_MEDTR
NOP56-like pre RNA processing ribonucleoprotein.
   
 0.990
A0A072W1Q3
Nucleolar RNA-associated protein, putative.
   
 0.988
A2Q5D0_MEDTR
Periodic tryptophan protein-associated region; WD40-like.
   
 0.988
G7KDK7_MEDTR
Nucleolar RNA-associated protein, putative.
   
 0.988
G7KC33_MEDTR
NOP56-like pre RNA processing ribonucleoprotein.
   
 0.987
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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