STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A072UB06Cyclin-dependent kinase; Belongs to the protein kinase superfamily. (412 aa)    
Predicted Functional Partners:
G7I853_MEDTR
Cyclin H, putative; Belongs to the cyclin family.
    
 0.993
G7IQL8_MEDTR
Putative tetratricopeptide-like helical domain, pentacotripeptide-repeat region of PROPR.
   
 0.993
G7J007_MEDTR
PPR containing plant-like protein.
   
 0.993
G7J304_MEDTR
General transcription factor IIH subunit, putative.
    
 0.993
G7L5Y2_MEDTR
General transcription factor IIH subunit.
   
 0.992
A0A072VC04
DNA repair helicase (Rad3).
    
 0.986
A0A072UAR7
TFIIH basal transcription factor complex subunit, putative.
   
 0.985
G7I2Y6_MEDTR
TFIIH basal transcription factor complex subunit, putative.
   
 0.985
G7KI90_MEDTR
Putative cdk-activating kinase assembly factor MAT1/Tfb3.
   
 0.983
G7J329_MEDTR
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.982
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.