Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A072VA58Squamosa promoter-binding-like protein. (171 aa)    
Predicted Functional Partners:
A0A072V463
HhH-GPD base excision DNA repair family protein.
      
 0.590
G7ZWP1_MEDTR
Putative histone acetyltransferase.
  
     0.535
A0A072U8C7
Uncharacterized protein.
  
     0.532
A0A072UMM3
B3 DNA-binding domain protein.
  
     0.510
G7JGX3_MEDTR
Ubiquitin system component CUE protein.
  
     0.501
G7II83_MEDTR
Ubiquitin system component CUE protein.
  
     0.498
G7IDZ7_MEDTR
Plastid fibrillin.
  
     0.495
G7K5Z8_MEDTR
Putative PB1 domain-containing protein.
  
     0.494
G7LGZ1_MEDTR
PHD6, putative.
  
     0.490
A0A072UUU3
Putative beta-amyrin synthase.
  
     0.485
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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