STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A072VBG9Splicing factor U2af small subunit A-like protein. (324 aa)    
Predicted Functional Partners:
A0A072UTX0
U2 snRNP auxilliary factor, large subunit, splicing factor.
   
 0.977
G7IP17_MEDTR
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.977
G7JM14_MEDTR
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.977
A0A072VGZ7
RNA recognition motif.
   
 0.976
A0A072U424
Splicing factor U2af small subunit A-like protein.
  
  
 
0.902
G7IA30_MEDTR
Splicing factor U2af small subunit A-like protein.
  
  
 
0.901
A0A072VDE4
Stem-specific TSJT1-like protein.
   
 0.784
A0A072VSE8
Aluminum induced protein with YGL and LRDR motif protein.
   
 0.784
B7FHV5_MEDTR
Putative nucleophile aminohydrolase.
   
 0.784
G7IIX1_MEDTR
Putative glucan endo-1,3-beta-D-glucosidase.
   
 0.784
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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