A0A072VD01 protein (Medicago truncatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A072VD01

FAR-RED impaired response-like protein. (264 aa)

Predicted Functional Partners:

I3SAI9_MEDTR

0.713

G7IVB8_MEDTR

0.695

G7JW74_MEDTR

0.513

G7K9P9_MEDTR

0.513

A0A072U416

0.475

G7ICU5_MEDTR

0.475

G7IY41_MEDTR

0.465

I3SI32_MEDTR

0.463

A0A072UD39

0.455

G7J040_MEDTR

0.449

Your Current Organism:

Medicago truncatula

NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A072U416	A0A072VD01	A0A072U416	A0A072VD01	DNA methyltransferase 1-associated protein.	FAR-RED impaired response-like protein.	0.475
A0A072U416	G7ICU5_MEDTR	A0A072U416	G7ICU5	DNA methyltransferase 1-associated protein.	DNA methyltransferase 1-associated protein.	0.548
A0A072U416	G7IVB8_MEDTR	A0A072U416	G7IVB8	DNA methyltransferase 1-associated protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.972
A0A072U416	G7JW74_MEDTR	A0A072U416	G7JW74	DNA methyltransferase 1-associated protein.	Transformation/transcription domain associated protein; Belongs to the PI3/PI4-kinase family.	0.980
A0A072U416	G7K9P9_MEDTR	A0A072U416	G7K9P9	DNA methyltransferase 1-associated protein.	Transformation/transcription domain associated protein, putative.	0.959
A0A072U416	I3SAI9_MEDTR	A0A072U416	I3SAI9	DNA methyltransferase 1-associated protein.	Chromatin modification MEAF6-like protein.	0.975
A0A072UD39	A0A072VD01	A0A072UD39	A0A072VD01	Putative The fantastic four family protein.	FAR-RED impaired response-like protein.	0.455
A0A072UD39	I3SI32_MEDTR	A0A072UD39	I3SI32	Putative The fantastic four family protein.	Putative transcription factor OFP family.	0.411
A0A072VD01	A0A072U416	A0A072VD01	A0A072U416	FAR-RED impaired response-like protein.	DNA methyltransferase 1-associated protein.	0.475
A0A072VD01	A0A072UD39	A0A072VD01	A0A072UD39	FAR-RED impaired response-like protein.	Putative The fantastic four family protein.	0.455
A0A072VD01	G7ICU5_MEDTR	A0A072VD01	G7ICU5	FAR-RED impaired response-like protein.	DNA methyltransferase 1-associated protein.	0.475
A0A072VD01	G7IVB8_MEDTR	A0A072VD01	G7IVB8	FAR-RED impaired response-like protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.695
A0A072VD01	G7IY41_MEDTR	A0A072VD01	G7IY41	FAR-RED impaired response-like protein.	DNA-binding bromodomain protein.	0.465
A0A072VD01	G7J040_MEDTR	A0A072VD01	G7J040	FAR-RED impaired response-like protein.	Putative transcription factor Hap3/NF-YB family.	0.449
A0A072VD01	G7JW74_MEDTR	A0A072VD01	G7JW74	FAR-RED impaired response-like protein.	Transformation/transcription domain associated protein; Belongs to the PI3/PI4-kinase family.	0.513
A0A072VD01	G7K9P9_MEDTR	A0A072VD01	G7K9P9	FAR-RED impaired response-like protein.	Transformation/transcription domain associated protein, putative.	0.513
A0A072VD01	I3SAI9_MEDTR	A0A072VD01	I3SAI9	FAR-RED impaired response-like protein.	Chromatin modification MEAF6-like protein.	0.713
A0A072VD01	I3SI32_MEDTR	A0A072VD01	I3SI32	FAR-RED impaired response-like protein.	Putative transcription factor OFP family.	0.463
G7ICU5_MEDTR	A0A072U416	G7ICU5	A0A072U416	DNA methyltransferase 1-associated protein.	DNA methyltransferase 1-associated protein.	0.548
G7ICU5_MEDTR	A0A072VD01	G7ICU5	A0A072VD01	DNA methyltransferase 1-associated protein.	FAR-RED impaired response-like protein.	0.475