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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A072VNF0Putative peptidase S59, nucleoporin. (1012 aa)    
Predicted Functional Partners:
A0A072UXW2
Putative transcription factor WD40-like family; Belongs to the WD repeat SEC13 family.
    
 0.996
G7KHW1_MEDTR
Putative transcription factor WD40-like family; Belongs to the WD repeat SEC13 family.
   
 0.996
A0A072U2U6
Putative transcription factor WD40-like family.
   
 0.989
A0A072VZF6
Plant poly(A)+ RNA export protein.
   
 0.989
G7JC14_MEDTR
Putative nucleoporin Nup54/Nup57/Nup44, nucleoporin Nup54, alpha-helical domain-containing protein.
  
0.973
Q2HVW5_MEDTR
Nuclear pore protein.
   
 0.972
G7L0K5_MEDTR
Putative nucleoporin Nup186/Nup192/Nup205.
   
 0.970
G7LAL2_MEDTR
Nuclear pore complex Nup155-like protein.
   
 0.970
A0A072VJG2
Suppressor of auxin resistance 1 protein.
  
 0.969
G7L8A5_MEDTR
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.969
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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