G7JEV8_MEDTR protein (Medicago truncatula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G7JEV8_MEDTR

Calreticulin. (420 aa)

Predicted Functional Partners:

G7I7Q4_MEDTR

0.983

A0A072V1W7

0.935

G7LGJ8_MEDTR

0.935

G7I9H2_MEDTR

0.904

G7KRL3_MEDTR

0.901

A0A072UZC8

0.893

A0A072TUS4

0.876

A0A072TV12

0.876

G7IPG7_MEDTR

0.813

A0A072UAK4

0.786

Your Current Organism:

Medicago truncatula

NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A072TUS4	A0A072TV12	A0A072TUS4	A0A072TV12	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	0.900
A0A072TUS4	A0A072UAK4	A0A072TUS4	A0A072UAK4	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Viral A-type inclusion repeat protein, putative.	0.863
A0A072TUS4	A0A072UZC8	A0A072TUS4	A0A072UZC8	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Putative Heat shock protein 70 family.	0.999
A0A072TUS4	A0A072V1W7	A0A072TUS4	A0A072V1W7	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Calnexin 2.	0.937
A0A072TUS4	G7I7Q4_MEDTR	A0A072TUS4	G7I7Q4	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Putative Heat shock protein Hsp90 family.	0.986
A0A072TUS4	G7I9H2_MEDTR	A0A072TUS4	G7I9H2	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.876
A0A072TUS4	G7IPG7_MEDTR	A0A072TUS4	G7IPG7	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Putative glycosyl transferase, family 8, nucleotide-diphospho-sugar transferase.	0.492
A0A072TUS4	G7JEV8_MEDTR	A0A072TUS4	G7JEV8	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.876
A0A072TUS4	G7KRL3_MEDTR	A0A072TUS4	G7KRL3	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.876
A0A072TUS4	G7LGJ8_MEDTR	A0A072TUS4	G7LGJ8	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Putative calreticulin/calnexin, concanavalin A-like lectin/glucanase domain-containing protein.	0.937
A0A072TV12	A0A072TUS4	A0A072TV12	A0A072TUS4	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	0.900
A0A072TV12	A0A072UAK4	A0A072TV12	A0A072UAK4	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	Viral A-type inclusion repeat protein, putative.	0.863
A0A072TV12	A0A072UZC8	A0A072TV12	A0A072UZC8	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	Putative Heat shock protein 70 family.	0.999
A0A072TV12	A0A072V1W7	A0A072TV12	A0A072V1W7	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	Calnexin 2.	0.937
A0A072TV12	G7I7Q4_MEDTR	A0A072TV12	G7I7Q4	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	Putative Heat shock protein Hsp90 family.	0.994
A0A072TV12	G7I9H2_MEDTR	A0A072TV12	G7I9H2	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.876
A0A072TV12	G7IPG7_MEDTR	A0A072TV12	G7IPG7	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	Putative glycosyl transferase, family 8, nucleotide-diphospho-sugar transferase.	0.492
A0A072TV12	G7JEV8_MEDTR	A0A072TV12	G7JEV8	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.876
A0A072TV12	G7KRL3_MEDTR	A0A072TV12	G7KRL3	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	Calreticulin.	0.876
A0A072TV12	G7LGJ8_MEDTR	A0A072TV12	G7LGJ8	Heat shock cognate 70 kDa-like protein; Belongs to the heat shock protein 70 family.	Putative calreticulin/calnexin, concanavalin A-like lectin/glucanase domain-containing protein.	0.937