STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G7LCW1_MEDTRPutative aminoacyltransferase, E1 ubiquitin-activating enzyme. (757 aa)    
Predicted Functional Partners:
G7L5H7_MEDTR
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.753
A0A072VKZ6
E3 ubiquitin-protein ligase, putative.
   
 0.735
A0A072VW29
E3 ubiquitin-protein ligase.
   
 0.735
G7L1Q3_MEDTR
E3 ubiquitin-protein ligase UPL3, putative.
   
 0.735
G7L4I6_MEDTR
E3 ubiquitin-protein ligase.
   
 0.735
G7JNF2_MEDTR
Putative aminoacyltransferase, E1 ubiquitin-activating enzyme.
   
 0.732
G7L4Y3_MEDTR
HECT-domain (Ubiquitin-transferase) protein.
   
 0.732
MTR_0137s0080
E3 ubiquitin-protein ligase KEG.
    
 0.716
G7IYR0_MEDTR
E3 ubiquitin-protein ligase KEG.
    
 0.716
A0A072V2A1
Ubiquitin-60S ribosomal L40 fusion protein.
   
 0.641
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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