STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G7LEC4_MEDTRPathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein. (146 aa)    
Predicted Functional Partners:
G7J6P4_MEDTR
GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.
   
 
 0.913
A0A072VJQ7
RNA polymerase II subunit B1 CTD phosphatase RPAP2, putative.
    
 
 0.910
Q2MGQ5_MEDTR
RPB3 DNA-directed RNA polymerase II subunit 3.
   
 
 0.903
G7KCW9_MEDTR
GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.
    
 
 0.862
G7LEM4_MEDTR
GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.
    
 
 0.862
G7IXS2_MEDTR
Putative DNA-directed RNA polymerase.
   
 
 0.798
A0A072U4U6
DNA-directed RNA polymerase II subunit RPB11-like protein.
    
 
 0.645
B7FGH5_MEDTR
DNA-directed RNA polymerase II subunit RPB11-like protein.
    
 
 0.645
A0A072VL49
DNA-directed RNA polymerase II subunit Rpb7-like protein.
   
 
 0.592
A0A072VWH0
DNA-directed RNA polymerase II subunit Rpb7-like protein.
   
 
 0.592
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.