STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I3SQE6_MEDTRSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)    
Predicted Functional Partners:
G7IMA2_MEDTR
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.998
G7LBD3_MEDTR
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
0.998
G7JVF0_MEDTR
Putative sm-like protein Lsm6/SmF.
   
 0.996
G7L0U8_MEDTR
Small nuclear ribonucleoprotein.
   
 0.996
A0A072UA59
Small nuclear ribonucleoprotein G.
   
 0.995
G7KEL0_MEDTR
Small nuclear ribonucleoprotein Sm D2.
   
 0.995
G7LBH7_MEDTR
Small nuclear ribonucleoprotein Sm D2.
   
 0.995
Q2HTF4_MEDTR
Small nuclear ribonucleoprotein G.
   
 0.995
G7JHS5_MEDTR
Elongation factor EF-Tu-like protein.
   
 0.993
A0A072TSQ6
Small nuclear ribonucleoprotein-associated protein.
   
 0.990
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.