STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HPD4-hydroxyphenylpyruvate dioxygenase. (437 aa)    
Predicted Functional Partners:
A0A072TQP2
Putative homogentisate 1,2-dioxygenase.
 
 0.997
G7LDS3_MEDTR
Tyrosine/nicotianamine family aminotransferase.
   
 
 0.981
G7JUD9_MEDTR
Putative homogentisate phytyltransferase.
     
 0.964
A0A072VUE3
Putative homogentisate solanesyltransferase.
     
 0.962
A0A072U8K4
Putative histidinol-phosphate transaminase.
    
 0.957
A0A072U994
Putative histidinol-phosphate transaminase.
    
 0.957
A0A072VCX2
Aspartate aminotransferase.
  
 
 0.913
A0A072UAN8
Macrophage migration inhibition factor-like protein.
     
 0.908
A0A072USK6
Macrophage migration inhibition factor-like protein.
     
 0.908
G7JUA0_MEDTR
Macrophage migration inhibition factor-like protein.
     
 0.908
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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