Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM33931.1 | SHM33959.1 | SAMN04488057_101127 | SAMN04488057_101128 | Sugar phosphate isomerase/epimerase. | Methionine aminotransferase. | 0.762 |
SHM33959.1 | SHM33931.1 | SAMN04488057_101128 | SAMN04488057_101127 | Methionine aminotransferase. | Sugar phosphate isomerase/epimerase. | 0.762 |
SHM33959.1 | SHM44292.1 | SAMN04488057_101128 | SAMN04488057_101468 | Methionine aminotransferase. | Transcriptional regulator, AraC family. | 0.728 |
SHM33959.1 | SHN14887.1 | SAMN04488057_101128 | SAMN04488057_10868 | Methionine aminotransferase. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.730 |
SHM33959.1 | SHN14894.1 | SAMN04488057_101128 | SAMN04488057_10869 | Methionine aminotransferase. | NADPH-dependent glutamate synthase beta chain. | 0.726 |
SHM33959.1 | SHN20770.1 | SAMN04488057_101128 | SAMN04488057_110132 | Methionine aminotransferase. | Glutamate synthase (NADPH/NADH) large chain. | 0.782 |
SHM33959.1 | SHN20888.1 | SAMN04488057_101128 | SAMN04488057_110149 | Methionine aminotransferase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.725 |
SHM33959.1 | SHN27097.1 | SAMN04488057_101128 | SAMN04488057_11572 | Methionine aminotransferase. | Cystathionine beta-synthase. | 0.749 |
SHM33959.1 | SHN33879.1 | SAMN04488057_101128 | SAMN04488057_12211 | Methionine aminotransferase. | D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.802 |
SHM33959.1 | SHN34603.1 | SAMN04488057_101128 | SAMN04488057_12337 | Methionine aminotransferase. | Aspartate kinase. | 0.824 |
SHM33959.1 | gcvP | SAMN04488057_101128 | SAMN04488057_102229 | Methionine aminotransferase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.730 |
SHM44292.1 | SHM33959.1 | SAMN04488057_101468 | SAMN04488057_101128 | Transcriptional regulator, AraC family. | Methionine aminotransferase. | 0.728 |
SHM44292.1 | SHN14887.1 | SAMN04488057_101468 | SAMN04488057_10868 | Transcriptional regulator, AraC family. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.743 |
SHM44292.1 | SHN14894.1 | SAMN04488057_101468 | SAMN04488057_10869 | Transcriptional regulator, AraC family. | NADPH-dependent glutamate synthase beta chain. | 0.806 |
SHM44292.1 | SHN20770.1 | SAMN04488057_101468 | SAMN04488057_110132 | Transcriptional regulator, AraC family. | Glutamate synthase (NADPH/NADH) large chain. | 0.885 |
SHM44292.1 | SHN27097.1 | SAMN04488057_101468 | SAMN04488057_11572 | Transcriptional regulator, AraC family. | Cystathionine beta-synthase. | 0.418 |
SHN14887.1 | SHM33959.1 | SAMN04488057_10868 | SAMN04488057_101128 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Methionine aminotransferase. | 0.730 |
SHN14887.1 | SHM44292.1 | SAMN04488057_10868 | SAMN04488057_101468 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Transcriptional regulator, AraC family. | 0.743 |
SHN14887.1 | SHN14894.1 | SAMN04488057_10868 | SAMN04488057_10869 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | NADPH-dependent glutamate synthase beta chain. | 0.998 |
SHN14887.1 | SHN20770.1 | SAMN04488057_10868 | SAMN04488057_110132 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | Glutamate synthase (NADPH/NADH) large chain. | 0.819 |
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