STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM41601.1Cytochrome c. (571 aa)    
Predicted Functional Partners:
SHM93550.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
 0.994
SHM41658.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
  
  0.928
SHN25614.1
Cytochrome c.
  
 
  0.847
SHM41635.1
Sugar phosphate isomerase/epimerase.
       0.773
SHM36122.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
 
  0.753
SHM84534.1
Cytochrome c, mono-and diheme variants.
 
 
  0.746
SHM73773.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
  
  0.714
SHM73792.1
Putative heme-binding domain-containing protein.
  
  
  0.714
SHM93351.1
Hypothetical protein.
  
 
  0.703
SHM74502.1
FAD/FMN-containing dehydrogenase.
   
  0.695
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.