STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM30403.1Chemotaxis protein MotB. (281 aa)    
Predicted Functional Partners:
SHM52397.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
  
 0.939
SHM39401.1
Outer membrane protein OmpA.
  
 
 0.783
SHN33978.1
PAS domain S-box-containing protein.
  
  
 0.656
SHN00192.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
  
  
 0.614
SHN13200.1
PAS domain S-box-containing protein.
  
  
 0.614
SHN12448.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
  
  
 0.602
SHN21986.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
  
  
  0.562
SHM72165.1
Lipid A 3-O-deacylase (PagL).
  
  
 0.559
SHN22096.1
Peptidase family C25.
 
  
 0.536
SHM64708.1
Outer membrane protein OmpA.
  
 0.534
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.