STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM58635.1Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR. (559 aa)    
Predicted Functional Partners:
SHM58607.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.972
SHN00192.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
 
 0.956
SHN22179.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
 
  0.927
SHN15053.1
PAS domain S-box-containing protein.
 
 
0.912
SHN08437.1
Signal transduction histidine kinase.
 
0.903
SHN33978.1
PAS domain S-box-containing protein.
 
0.898
SHN26891.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.894
SHN31551.1
Signal transduction histidine kinase.
 
0.892
SHN13200.1
PAS domain S-box-containing protein.
 
 
0.890
SHM78277.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.883
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.