STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM59321.1Fructan beta-fructosidase; Belongs to the glycosyl hydrolase 32 family. (502 aa)    
Predicted Functional Partners:
SHM59351.1
Signal transduction histidine kinase.
       0.737
SHN27956.1
Fructokinase; Belongs to the carbohydrate kinase PfkB family.
 
 
 0.731
SHM32921.1
Amino acid/polyamine/organocation transporter, APC superfamily.
     
 0.709
SHM36368.1
Beta-glucosidase.
  
  
  0.667
SHN15550.1
Tagaturonate reductase.
     
 0.612
SHN17116.1
Hypothetical protein.
 
  
  0.596
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.591
SHN15361.1
UDPglucose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
     
 0.582
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
 
 0.537
SHN26710.1
Hypothetical protein.
   
 
 0.529
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.