Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM59863.1 | SHM59888.1 | SAMN04488057_102279 | SAMN04488057_102280 | single-stranded-DNA-specific exonuclease. | Lipopolysaccharide export system ATP-binding protein. | 0.792 |
SHM59863.1 | SHM59917.1 | SAMN04488057_102279 | SAMN04488057_102281 | single-stranded-DNA-specific exonuclease. | GH3 auxin-responsive promoter. | 0.746 |
SHM59863.1 | SHN01055.1 | SAMN04488057_102279 | SAMN04488057_105191 | single-stranded-DNA-specific exonuclease. | DNA processing protein. | 0.590 |
SHM59863.1 | SHN01966.1 | SAMN04488057_102279 | SAMN04488057_105248 | single-stranded-DNA-specific exonuclease. | Single-strand DNA-binding protein. | 0.588 |
SHM59863.1 | SHN19900.1 | SAMN04488057_102279 | SAMN04488057_11049 | single-stranded-DNA-specific exonuclease. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family. | 0.558 |
SHM59863.1 | SHN26835.1 | SAMN04488057_102279 | SAMN04488057_11538 | single-stranded-DNA-specific exonuclease. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.545 |
SHM59863.1 | mutS | SAMN04488057_102279 | SAMN04488057_102454 | single-stranded-DNA-specific exonuclease. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.638 |
SHM59863.1 | polA | SAMN04488057_102279 | SAMN04488057_102490 | single-stranded-DNA-specific exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.538 |
SHM59863.1 | priA | SAMN04488057_102279 | SAMN04488057_11827 | single-stranded-DNA-specific exonuclease. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.672 |
SHM59863.1 | topA | SAMN04488057_102279 | SAMN04488057_106256 | single-stranded-DNA-specific exonuclease. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.546 |
SHM59888.1 | SHM59863.1 | SAMN04488057_102280 | SAMN04488057_102279 | Lipopolysaccharide export system ATP-binding protein. | single-stranded-DNA-specific exonuclease. | 0.792 |
SHM59888.1 | SHM59917.1 | SAMN04488057_102280 | SAMN04488057_102281 | Lipopolysaccharide export system ATP-binding protein. | GH3 auxin-responsive promoter. | 0.750 |
SHM59917.1 | SHM59863.1 | SAMN04488057_102281 | SAMN04488057_102279 | GH3 auxin-responsive promoter. | single-stranded-DNA-specific exonuclease. | 0.746 |
SHM59917.1 | SHM59888.1 | SAMN04488057_102281 | SAMN04488057_102280 | GH3 auxin-responsive promoter. | Lipopolysaccharide export system ATP-binding protein. | 0.750 |
SHN01055.1 | SHM59863.1 | SAMN04488057_105191 | SAMN04488057_102279 | DNA processing protein. | single-stranded-DNA-specific exonuclease. | 0.590 |
SHN01055.1 | SHN01966.1 | SAMN04488057_105191 | SAMN04488057_105248 | DNA processing protein. | Single-strand DNA-binding protein. | 0.441 |
SHN01055.1 | topA | SAMN04488057_105191 | SAMN04488057_106256 | DNA processing protein. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.556 |
SHN01966.1 | SHM59863.1 | SAMN04488057_105248 | SAMN04488057_102279 | Single-strand DNA-binding protein. | single-stranded-DNA-specific exonuclease. | 0.588 |
SHN01966.1 | SHN01055.1 | SAMN04488057_105248 | SAMN04488057_105191 | Single-strand DNA-binding protein. | DNA processing protein. | 0.441 |
SHN01966.1 | SHN19900.1 | SAMN04488057_105248 | SAMN04488057_11049 | Single-strand DNA-binding protein. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family. | 0.662 |
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