STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM62624.1TonB-linked outer membrane protein, SusC/RagA family. (1033 aa)    
Predicted Functional Partners:
SHM62654.1
Starch-binding associating with outer membrane.
 
     0.925
SHN32945.1
Starch-binding associating with outer membrane.
  
     0.773
SHM79765.1
SusD family protein.
  
     0.772
SHN11435.1
Starch-binding associating with outer membrane.
  
     0.766
SHM38275.1
Starch-binding associating with outer membrane.
  
     0.755
SHN34840.1
Starch-binding associating with outer membrane.
  
     0.715
SHN24716.1
Starch-binding associating with outer membrane.
  
     0.700
SHM38346.1
Starch-binding associating with outer membrane.
  
     0.685
SHM76071.1
Starch-binding associating with outer membrane.
  
     0.682
SHN32626.1
Starch-binding associating with outer membrane.
  
     0.682
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.