STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM62953.1Protein of unknown function. (210 aa)    
Predicted Functional Partners:
SHN12836.1
Protein of unknown function.
  
     0.613
SHN30693.1
Sugar phosphate isomerase/epimerase.
 
     0.613
SHN01591.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.601
SHN17147.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
   
 
  0.591
SHM41658.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
  
  0.588
SHM62686.1
Trehalose utilisation.
  
     0.567
SHM38417.1
Protein of unknown function.
  
     0.563
SHM79513.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
  
  0.550
SHM74458.1
Protein of unknown function.
  
     0.539
SHN21732.1
Predicted dehydrogenase.
  
     0.534
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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