STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM87732.1TonB-dependent Receptor Plug Domain. (335 aa)    
Predicted Functional Partners:
SHM87756.1
TonB dependent receptor.
     0.989
SHM87779.1
HmuY protein.
 
     0.894
SHM87708.1
Haemin-degrading HemS.ChuX domain-containing protein.
 
    0.787
SHM87663.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.778
SHM87636.1
Iron complex transport system substrate-binding protein.
 
    0.748
SHM87685.1
ABC transporter.
       0.649
SHN12628.1
Outer membrane protein TolC.
  
     0.544
SHM87799.1
Hypothetical protein.
       0.513
SHN22050.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.422
SHN22295.1
Hypothetical protein.
  
 
   0.402
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.