STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM88874.1Uncharacterised BCR, YnfA/UPF0060 family; Belongs to the UPF0060 family. (77 aa)    
Predicted Functional Partners:
SHM88899.1
Uncharacterised BCR, YnfA/UPF0060 family; Belongs to the UPF0060 family.
 
     0.940
SHM88850.1
Cd2+/Zn2+-exporting ATPase.
       0.697
SHM88827.1
Fe(3+) dicitrate transport protein.
 
     0.609
SHM88924.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
       0.490
SHM88779.1
Cation diffusion facilitator family transporter.
       0.468
SHM88801.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
       0.462
SHM88707.1
Saccharopine dehydrogenase, NADP-dependent.
 
     0.451
SHM88756.1
cation:H+ antiporter.
       0.423
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.