STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM99831.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
SHN24676.1
DNA polymerase-3 subunit alpha.
  
 0.996
SHM85974.1
DNA polymerase III, delta subunit.
   
 0.929
SHN01089.1
DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...]
   
 0.928
SHN33380.1
Error-prone DNA polymerase; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
   
 0.877
SHM78914.1
DNA polymerase-3 subunit epsilon.
   
 0.860
SHN01966.1
Single-strand DNA-binding protein.
    
 
 0.770
SHN20753.1
Single-strand DNA-binding protein.
    
 
 0.770
SHM62897.1
Hypothetical protein.
  
     0.740
SHN26844.1
DNA polymerase-3 subunit epsilon.
   
 0.735
SHN34163.1
Putative porin.
  
     0.654
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.