STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN02373.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
SHN02383.1
Hypothetical protein.
       0.773
SHN29689.1
Tetratricopeptide repeat-containing protein.
  
     0.655
SHN02357.1
Metallo-beta-lactamase family protein.
       0.576
SHN02427.1
Hypothetical protein.
 
     0.572
SHN17310.1
Mycothiol system anti-sigma-R factor.
  
     0.549
SHN02343.1
Phage shock protein C (PspC) family protein.
 
     0.536
SHN13568.1
Hypothetical protein.
  
     0.536
SHN02398.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.528
SHN02411.1
Hypothetical protein.
       0.528
SHN29696.1
Hypothetical protein.
  
     0.494
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.