STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN03039.1Polysaccharide export outer membrane protein. (265 aa)    
Predicted Functional Partners:
SHN03025.1
Capsular exopolysaccharide family.
 
 0.997
SHN02093.1
Capsular exopolysaccharide family.
 
 0.990
SHM93231.1
Capsular exopolysaccharide family.
 
 0.984
SHN06991.1
Capsular exopolysaccharide family.
 
 0.984
SHN15727.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 0.961
SHN03008.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.676
SHN02993.1
Acetyltransferase (isoleucine patch superfamily).
  
    0.663
SHM93256.1
Polysaccharide export outer membrane protein.
  
  
 
0.601
SHN07048.1
Polysaccharide export outer membrane protein.
  
  
 
0.597
SHN31827.1
Lipopolysaccharide transport system permease protein.
  
  
 0.576
Your Current Organism:
Cyclobacterium lianum
NCBI taxonomy Id: 388280
Other names: C. lianum, CGMCC 1.6102, Cyclobacterium lianum Ying et al. 2006, JCM 14011, strain HY9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.